Welcome to the Metagenomics Workshop at SciLifeLab, StockholmΒΆ
This is a three day metagenomics workshop. We will discuss assembly, binning and annotation of metagenomic samples.
Program:
- Day 2 Time 14-17
- Day 3 Time 13.30-17
Contents:
- Metagenomic Assembly Workshop
- Comparative Functional Analysis Workshop
- Comparative Taxonomic Analysis Workshop
- Metagenomic Binning Workshop
- Metagenomic Annotation Workshop
- Checking required software
- Translating nucleotide sequences into amino acid sequences
- Search amino acid sequences with HMMER against the Pfam database
- Normalization of count data from the metagenomic data sets
- Estimating differentially abundant protein families in the metagenomes
- Bonus exercise: Using Metaxa2 to investigate the taxonomic content
Enjoy!
For questions:
- Johannes Alneberg at sclifelab dot se
- Johan dot Bengtsson-Palme at gu dot se
- Ino de Bruijn at bils dot se
- Luisa Hugerth at scilifelab dot se
The code that generates this workshop is available at: