Comparative Functional Analysis WorkshopΒΆ
In this workshop we will do a comparative analysis of several Baltic Sea samples on function. The following topics will be discussed:
- Find genes on a coassembly of all samples using Prodigal
- Classify the found genes with similar function in Clusters of Orthologous Groups (COG) using WebMGA
- Compare the expression of the different COG families and classes by looking at their coverage in different samples using R
The workshop has the following exercises:
- Gene Finding Exercise
- COG Exercise
- Comprative Functional Analysis Exercise
Contents: